Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs58657125 chr19:41546395 G/A 0.000155 173 16.12 15.53 8.57 KM Plot
PAAD rs58695771 chr11:73565392 G/A 1.79E-6 178 15.57 15.33 3.43 KM Plot
PAAD rs58710983 chr1:36614664 GT/G 8.54E-5 178 19.47 12.2 16.27 KM Plot
PAAD rs58815008 chr5:72636586 C/T 1.78E-9 175 15.62 14.23 2.2 KM Plot
PAAD rs58888255 chr22:50315627 G/A 6.48E-5 175 15.67 14.88 3.9 KM Plot
PAAD rs58939176 chr7:102714575 G/C 6.7E-8 178 16.17 12.2 3.43 KM Plot
PAAD rs58988271 chr7:6164704 C/G 0 177 15.33 15.77 1.03 KM Plot
PAAD rs59046184 chr3:39125609 CTTAATA/C 0.000149 178 15.27 16.37 7.47 KM Plot
PAAD rs59097337 chr3:39029102 AG/A 0.000167 176 15.33 16.6 7.47 KM Plot
PAAD rs59111986 chr3:39074861 AC/A 0.000149 178 15.27 16.37 7.47 KM Plot
PAAD rs591484 chr1:114863184 G/C 0 172 15.53 15.63 0.4 KM Plot
PAAD rs59167855 chr20:46410643 G/A 8.58E-13 178 15.57 13.15 1.37 KM Plot
PAAD rs592045 chr11:74581961 T/C 6.4E-5 177 4.27 15.5 15.62 KM Plot
PAAD rs59298018 chr2:217895816 C/T 3.87E-5 178 16.07 14.17 7.2 KM Plot
PAAD rs59298781 chr1:16326043 T/TTTTA 2.32E-6 174 3.43 15.53 15.5 KM Plot